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Marathon

Vacation Home Rentals


Welcome to Indigo Reef Resort, a luxurious marvel among Marathon hotels and a haven in the heart of the beautiful Florida Keys. Located just 90 miles south of Miami and 45 miles from historic Key West, Indigo Reef Resort is conveniently situated next door to top-rated Marathon activities and attractions including the Florida Keys Aquarium Encounters and Capt. Hook’s Marina & Dive Center offering easy access to water adventures in the Florida Keys.

Experience an incomparable vacation when you stay at our Marathon resort. The luxury waterfront vacation homes at our unforgettable location exude a private paradise where you’ll trade in winter frost for endless sunshine, exceptional fishing, and dazzling sunsets from your own private porch and dock.

Our luxury Marathon vacation rentals are favorably situated on the Gulf of Mexico within five minutes of the Atlantic Ocean via the Vaca Cut waterway. Guests enjoy unprecedented access to the surrounding Florida bay, the renowned tropical reefs of the Marine Sanctuary, and the best fishing and diving in the world, among other fun-filled activities. In Marathon, visitors can expect to reel in abundant marlin, sailfish, tuna, amber jack, dolphin, wahoo, yellowtail, grouper, snook, barracuda, kingfish, bonefish, and tarpon on their seasonal excursions.

Special Offers

Now is the perfect opportunity to experience our Marathon vacation rentals. Take advantage of one of many discounted rates to enjoy savings on regular rental rates at Indigo Reef Resort. Enjoy your stay at our Marathon resort with special offers including the Last-Minute Booking Discounts, Advance Purchase Rate Discounts, Free Night(s) Offers, and more. During a stay at the Indigo Reef Resort Villas & Marina, guests will enjoy Conch-style accommodations, luxury amenities, and an unmatched location just minutes from fishing and diving.

Book Now, Pay Later

Available any time of year

Reserve the dates of your vacation in advance with a minimal deposit.


Offer Details

Last-Minute Booking Discount – 10% OFF

Available August 19th – September 21st, 2022

Enjoy savings of 10% off your last-minute Florida Keys getaway.


Offer Details

90-Day Advance Purchase Rate Discount – 15% OFF

Available April 24th – June 30th, 2022

Book 90+ days in advance and enjoy savings of 15% off your FL Keys getaway.


Offer Details

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Vacation Rentals

Our upscale Marathon vacation rentals feature three spacious bedrooms, fully stocked kitchens, water-view living spaces, complimentary boat dockage with every Villa, private Wi-Fi networks, in-suite washers and dryers, and more thoughtful amenities. Our exhaustive list of superb amenities come together to provide you with an incredible and convenient Keys vacation. Within minutes from Indigo Reef, you can enjoy daytrips to local sandbars, world-class fishing, kayaking to nearby islands and through winding mangrove channels, and many more adventurous activities. End each day of your stay with a moment of awe and appreciation from your private balcony overlooking the Gulf of Mexico where the sunset lights up the sky in a combination of pinks, orange, and purple hues. Reserve your stay today and discover for yourself what makes the island chain an annual vacation destination for travelers from all over the world.

Map & Amenities

The jewel among Florida Keys vacation rentals, Indigo Reef Resort Villas offers a splendid combination of luxury Marathon resort accommodations and superb amenities including private docks on the Gulf of Mexico. Ideal for Florida Keys family vacations or romantic getaways, our Marathon vacation rentals are located within easy driving distance of Miami (90 miles) and historic Key West (45 miles).

  • Gated, 15-acre waterfront enclave, featuring Key West-style architecture and lush landscaping
  • 67 luxury 3BR/2.5BA Townhomes
  • Gulf-front, communal swimming pool
  • Updated and spacious fitness center
  • Fully equipped kitchens & dining
  • Balconies overlooking the Gulf with stunning sunset views
  • All Indigo Reef homes include slip space for boats up to 31’ (length overall)
  • Pet-friendly accommodations (one-time, non-refundable fee of $175.00; one pet, up to 50 lbs. [pets are not permitted in Villas 13, 26, 64, 65, 66 or 67])

Marina Dockage

Celebrated as the fishing capital of the Keys, Marathon is a first choice for novice and world-class anglers alike. Experience the ultimate Florida Keys fishing vacation, where guests frequently reel in a series of fish like Marlin, Tuna, Sailfish, Yellowtail, Grouper, Kingfish, and more.

Our private Marathon vacation rental community is a fishing enthusiast’s dream come true. Each of our luxury Florida Keys vacation homes features its own 31′ boat slip just steps from your sunset and water-view deck, offering easy access to the deep indigo blue waters of the Gulf of Mexico and the Atlantic Ocean in Marathon, Florida. Convenience is vital at Indigo Reef Resort Villas. Your Marathon, Florida fishing vacation is even more enjoyable with state-of-the-art fish cleaning and fillet stations.

MM 54 Public Boat Ramp
We recommend the newly renovated Mile Marker 54 public boat ramp, located on Overseas Highway just 3 minutes from your Villa dock. There is ample parking for both vehicle and temporary trailer drop-off. Use of this ramp is without charge.

Driftwood Marina & Storage
Secure trailer storage is available at Driftwood Marina & Storage located at the corner of Coco Plum Drive & Overseas Highway stop light, 1 minute from the public boat launch ramp at MM 54. Please contact Shelly for trailer storage information prior to arrival at (305) 289-0432. After hours & weekends at (305) 849-1701.

Marathon Boat Trailer Storage
As an alternative, just 3 miles south from Indigo Reef on Overseas Hwy is Marathon Boat Trailer Storage. Their facility offers dependable, gated storage for your trailer at competitive rates with 24/7 surveillance and a freshwater washdown at the time of drop-off. Saturday to Saturday reservations required. Reserve online or by phone by dialing (305) 509-0774.

Boat Length Requirements

Strictly monitored by HOA management

  • Dock space lengths are all 35′ maximum
  • Boats must have a length overall of no more than 31′
  • Marina Dock Area Draft: Low Tide 4′

Please click here for the Dock Assignment Chart to view the specific dock number that corresponds to each Villa. The Villas and docks are all privately owned, and the docks are deeded to specific Villas. Docks may not be reassigned to another Villa under any circumstances.

  • GPS Marina Coordinates: 24° 44’050″N and 81° 02’050″W

FAQ & HOA Rules

Click here to view the Indigo Reef Resort Frequently Asked Questions, and a complete list of Homeowner’s Associate Rules.