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Marathon

Vacation Home Rentals


Welcome to Indigo Reef Resort, a luxurious marvel among Marathon, FL, resorts and a haven in the heart of the beautiful Florida Keys. Located just 90 miles south of Miami and 45 miles from historic Key West, Indigo Reef Resort is conveniently situated next door to top-rated Marathon activities and attractions, including the Florida Keys Aquarium Encounters and Capt. Hook’s Marina & Dive Center offers.

Experience an incomparable vacation when you stay at our Marathon resort. The luxury waterfront vacation homes at our unique location exude a private paradise where you’ll trade in winter frost for endless sunshine, exceptional fishing, and dazzling sunsets from your private porch and dock.

Our luxury Marathon vacation rentals are favorably situated on the Gulf of Mexico within five minutes of the Atlantic Ocean via the Vaca Cut waterway. Guests enjoy unprecedented access to the surrounding Florida Bay, the renowned tropical reefs of the Marine Sanctuary, and the best fishing and diving in the world, among other fun-filled activities. In Marathon, visitors can expect to reel in giant marlin, sailfish, tuna, amberjack, dolphin, wahoo, yellowtail, grouper, snook, barracuda, kingfish, bonefish, and tarpon on their seasonal excursions.

Special Offers

Now is the perfect opportunity to experience our Marathon vacation rentals. Take advantage of one of many discounted rates to enjoy savings on regular rental rates at Indigo Reef Resort. Enjoy your stay at our Marathon resort with special offers, including the Last-Minute Booking Discount, Advance Purchase Rate Discount, Free Night(s) Offers, and more. During a stay at the Indigo Reef Resort Villas & Marina, guests will enjoy Conch-style accommodations, luxury amenities, and an unmatched location just minutes from fishing and diving.

Book Now, Pay Later

Available any time of year

Reserve the dates of your vacation in advance with a minimal deposit.


Offer Details

Last-Minute Booking Discount – 15% OFF

Available January 23rd – February 29th, 2024

Enjoy savings of 15% off your last-minute Florida Keys getaway.


Offer Details

6th & 7th Nights Free

Available August 13th – November 9th, 2023

Book your stay directly with KeysCaribbean and the 6th & 7th nights of your stay are FREE!


Offer Details

90-Day Advance Purchase Rate Discount – 15% OFF

Available January 1st – 31st, 2024

Book 90+ days in advance and enjoy savings of 15% off your FL Keys getaway.


Offer Details

Subscribe to Receive Special Offers and Save 5%

Subscribe to our mailing and receive future emails with the latest special offers and discounted rates. New subscribers will receive a discount code for 5% off their first booking.

This offer can only be redeemed once on a direct booking. This offer is valid for stays any time of year and at any location but is not usable with other offers and cannot be applied to existing reservations. The minimum length of stay requirement varies by location and dates.

Vacation Rentals

Our upscale Marathon Key vacation rentals feature three spacious bedrooms, fully stocked kitchens, water-view living spaces, complimentary boat dockage with every Villa, private Wi-Fi networks, in-suite washers and dryers, and more thoughtful amenities. Within our rental homes, an exhaustive list of superb amenities comes together to provide you with an incredible and convenient Florida Keys vacation. Just minutes from Indigo Reef, you can enjoy day trips to local sandbars, world-class fishing, kayaking to nearby islands, winding mangrove channels, and many more adventurous activities. End each day of your stay with a moment of awe and appreciation from your private balcony overlooking the Gulf of Mexico, where the sunset lights up the sky in a combination of pink, orange, and purple hues. Reserve your stay today and discover for yourself what makes the island chain an annual vacation destination for travelers worldwide.

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Waterfront Villa 2

3BR/2.5BA | Sleeps 8

Rates from $219

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Waterfront Villa 9

3BR/2.5BA | Sleeps 8

Rates from $219

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Waterfront Villa 11

3BR/2.5BA | Sleeps 6

Rates from $219

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Waterfront Villa 22

3BR/2.5BA | Sleeps 6

Rates from $219

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Waterfront Villa 23

3BR/2.5BA | Sleeps 6

Rates from $219

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Waterfront Villa 24

3BR/2.5BA | Sleeps 6

Rates from $219

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Waterfront Villa 25

3BR/2.5BA | Sleeps 8

Rates from $219

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Waterfront Villa 26

3BR/2.5BA | Sleeps 6

Rates from $219

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Waterfront Villa 56

3BR/2.5BA | Sleeps 8

Rates from $219

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Waterfront Villa 61

3BR/2.5BA | Sleeps 8

Rates from $219

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Waterfront Villa 63

3BR/2.5BA | Sleeps 8

Rates from $219

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Waterfront Villa 64

3BR/2.5BA | Sleeps 8

Rates from $399

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Waterfront Villa 65

3BR/2.5BA | Sleeps 8

Rates from $319

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Waterfront Villa 66

3BR/2.5BA | Sleeps 8

Rates from $319

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Waterfront Villa 67

3BR/2.5BA | Sleeps 8

Rates from $219

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Map & Amenities

The jewel among Marathon Key vacation rentals, Indigo Reef Resort Villas offers a splendid combination of luxury Marathon resort accommodations and superb amenities, including private docks on the Gulf of Mexico. Ideal for family vacations or romantic getaways, our Marathon vacation rentals are located within easy driving distance of Miami (90 miles) and historic Key West (45 miles).

  • Gated, 15-acre waterfront enclave featuring Key West-style architecture and lush landscaping
  • 67 luxury 3BR/2.5BA Townhomes
  • Gulf-front, communal swimming pool
  • Updated and spacious fitness center
  • Fully equipped kitchens & dining
  • Balconies overlooking the Gulf with stunning sunset views
  • All Indigo Reef homes include slip space for boats up to 31’ (length overall)
  • Pet-friendly accommodations (one-time, non-refundable fee of $255.00; one pet, up to 50 lbs. [pets are not permitted in Villas 26, 64, 66, or 67])

Marina Dockage

Celebrated as the fishing capital of the Keys, Marathon is a first choice for novice and world-class anglers alike. Experience the ultimate Florida Keys fishing vacation, where guests frequently reel in fish like Marlin, Tuna, Sailfish, Yellowtail, Grouper, Kingfish, and more.

Our private Marathon vacation rental community is a fishing enthusiast’s dream. Each of our luxury Florida Keys vacation homes features its own 31′ boat slip just steps from your sunset and water-view deck, offering easy access to the deep indigo blue waters of the Gulf of Mexico and the Atlantic Ocean in Marathon, Florida. Convenience is vital at Indigo Reef Resort Villas. Your Marathon, Florida, fishing vacation is even more enjoyable with state-of-the-art fish cleaning and fillet stations.

MM 54 Public Boat Ramp
We recommend the Mile Marker 54 public boat ramp on Overseas Highway, just 3 minutes from your Villa dock. There is ample parking for both vehicle and temporary trailer drop-off.

  • $25 Launch/$25 Retrieval
  • Trailer Parking $20 per day (No overnight parking)

Moose Lodge
Trailer parking is not permitted onsite at Indigo Reef. We suggest reserving parking prior to your stay at Moose Lodge conveniently located directly outside the gated entrance to Indigo Reef ($20.00/night, reservation required). Please call (305) 481-7187 for more information or reservations.

Marathon Boat Trailer Storage
Alternatively, Marathon Boat Trailer Storage is just 3 miles south of Indigo Reef on Overseas Hwy. Their facility offers dependable, gated storage for your trailer at competitive rates with 24/7 surveillance and a freshwater washdown during drop-off. Saturday to Saturday reservations are required. Reserve online or by phone by dialing (305) 509-0774.

Boat Length Requirements

Strictly monitored by HOA management

  • Dock space lengths are all 35′ maximum
  • Boats must have a length overall of no more than 31′
  • Marina Dock Area Draft: Low Tide 4′

Please click here for the Dock Assignment Chart to view the dock number corresponding to each Villa. The Villas and docks are all privately owned, and the ports are deeded to specific Villas. Docks may not be reassigned to another Villa under any circumstances.

  • GPS Marina Coordinates: 24° 44’050″N and 81° 02’050″W

FAQ & HOA Rules

Click here to view the Indigo Reef Resort Frequently Asked Questions and a complete Homeowner’s Association Rules list.